PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG029695t1
Common NameTCM_029695
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family Trihelix
Protein Properties Length: 359aa    MW: 40146.4 Da    PI: 9.4361
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG029695t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.45.9e-1632123187
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                       +W+++ + +L++a  ++  +l+rg+l++++W++v++++     + ++ +r+ +qCk++++ ++k+yk +k++  + + + +s++p+f++l+a
  Thecc1EG029695t1  32 CWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVnalhgHTKKTHRTDVQCKNRIDTIKKKYKIEKARVTSSNGTLTSSWPFFERLDA 123
                       7****************************************99999***************************999888899*******985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.4E-2630124No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MGDLTDSLTP STTPTPLSTT THSRPLPVRE DCWSEEATST LVDAWGRRYL ELNRGNLRQK  60
DWQDVADAVN ALHGHTKKTH RTDVQCKNRI DTIKKKYKIE KARVTSSNGT LTSSWPFFER  120
LDALIGSNFS AKKPSPSPKI SPKPSPRLSP RIPGSPPVAL PLPMPYRRTP ASATVVALPQ  180
KRPADDGYFR RNYSAVAAAA AAAAAETDEE EGEESEAEES EGEGEEREGM SRLARAIERF  240
GEVYERVEGE KLRQMVELEK QRMQFAKDLE VQRMRMFMDT QVQLERIKRG KRSSGSSGIY  300
VSQVEAIGVN LGFWIFKTFI ASHQGKSFDC FLRGKNMKNI DFYSHPLKVH TVLADTGL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007025373.10.0Sequence-specific DNA binding transcription factors isoform 1
SwissprotQ9LJG82e-34ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A061GDM30.0A0A061GDM3_THECC; Sequence-specific DNA binding transcription factors isoform 1
STRINGPOPTR_0003s11850.11e-128(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96352334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.15e-41sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]